Index

A

Activation (class in colfi.sequence) activation() (in module colfi.element) AddGaussianNoise (class in colfi.data_simulator)

auto_train() (colfi.models_ann.OptimizeMLP method) avgPool1d() (in module colfi.element) avgPool2d() (in module colfi.element) avgPool3d() (in module colfi.element)

B

base_epoch (colfi.nde.NDEs property) BatchNorm (class in colfi.sequence) best_fit (colfi.plotter.BestFitsData property) best_fit_true (colfi.plotter.BestFitsData property) best_median() (colfi.space_updater.Chains static method) best_mode() (colfi.space_updater.Chains static method) bestFit() (colfi.space_updater.Chains static method) bestFits_all (colfi.plotter.BestFitsData property)

BestFitsData (class in colfi.plotter) BestPredictedData (class in colfi.plotter) beta_loss() (in module colfi.fcnet_mdn) beta_PDF() (in module colfi.fcnet_mdn) beta_sampler() (in module colfi.fcnet_mdn) BetaMDN (class in colfi.fcnet_mdn) Branch (class in colfi.fcnet_g) (class in colfi.fcnet_mdn)

C

call_GPU() (colfi.data_processor.Transfer method) CELU() (in module colfi.element) chain (colfi.nde.NDEs property) chain_true (colfi.plotter.PosteriorInfo property) Chains (class in colfi.space_updater) check_GPU() (colfi.data_processor.Transfer method) check_limit() (colfi.space_updater.CheckParameterSpace static method) check_normType() (colfi.models_mdn.CheckNormType method) CheckNormType (class in colfi.models_mdn) CheckParameterSpace (class in colfi.space_updater) colfi.cosmic_params module colfi.data_processor module colfi.data_simulator module colfi.element module colfi.fcnet_ann module colfi.fcnet_g module colfi.fcnet_mdn module colfi.models_ann module colfi.models_g module

colfi.models_mdn module colfi.models_mg module colfi.nde module colfi.nodeframe module colfi.plotter module colfi.sequence module colfi.space_updater module colfi.utils module comb_obs() (colfi.data_simulator.SimObservations method) combinations (colfi.data_simulator.SimParameters property) contour_name (colfi.plotter.PlotMultiPosterior property) copyLayers_fromTrainedNet() (colfi.models_ann.OneBranchMLP method) cov_copy (colfi.models_ann.OptimizeMLP property) (colfi.nde.NDEs property) (colfi.nde.Predict property) cov_matrix() (colfi.space_updater.Chains static method) cpu2cuda() (in module colfi.data_processor) cuda2numpy() (in module colfi.data_processor) cuda2torch() (in module colfi.data_processor) cut_params() (colfi.data_simulator.CutParams method) CutParams (class in colfi.data_simulator)

D

DataPreprocessing (class in colfi.data_processor) decreasingNode() (in module colfi.nodeframe) Dropout (class in colfi.sequence)

dropout() (in module colfi.element) dropout2d() (in module colfi.element) dropout3d() (in module colfi.element)

E

ELU() (in module colfi.element) ELU_1 (class in colfi.element) elu_1() (in module colfi.element)

error_devs (colfi.space_updater.UpdateParameterSpace property) error_devs() (colfi.space_updater.Chains static method) exp() (colfi.utils.LrDecay method)

F

FcNet (class in colfi.fcnet_ann) file_identity_str (colfi.nde.NDEs property) FilePath (class in colfi.utils) filePath() (colfi.utils.FilePath method) filter_index() (colfi.data_simulator.ParametersFilter method) filter_localSample() (colfi.data_simulator.SimObservations method) filter_localSamples() (colfi.data_simulator.SimObservations method) filter_params() (colfi.data_simulator.ParametersFilter method) filter_previousSamples() (colfi.data_simulator.SimObservations method) flush() (colfi.utils.Logger method) fold_sphere() (colfi.data_simulator.SimParameters method) forward() (colfi.element.ELU_1 method) (colfi.element.Sigmoid_1 method) (colfi.element.Softplus_1 method) (colfi.element.Softplus_2 method) (colfi.fcnet_ann.FcNet method) (colfi.fcnet_ann.MultiBranchFcNet method) (colfi.fcnet_ann.MultiBranchFcNet_MC method) (colfi.fcnet_ann.MultiBranchFcNet_test method) (colfi.fcnet_g.MLPGaussian method) (colfi.fcnet_g.MLPMultivariateGaussian method) (colfi.fcnet_g.MLPMultivariateGaussian_AvgMultiNoise method) (colfi.fcnet_g.MultiBranchMLPGaussian method) (colfi.fcnet_g.MultiBranchMLPMultivariateGaussian method) (colfi.fcnet_mdn.BetaMDN method) (colfi.fcnet_mdn.GaussianMDN method) (colfi.fcnet_mdn.MultiBranchBetaMDN method) (colfi.fcnet_mdn.MultiBranchGaussianMDN method) (colfi.fcnet_mdn.MultiBranchMultivariateGaussianMDN method) (colfi.fcnet_mdn.MultivariateGaussianMDN method) (colfi.fcnet_mdn.MultivariateGaussianMDN_AvgMu method) (colfi.fcnet_mdn.MultivariateGaussianMDN_AvgMultiNoise method)

from_chain() (colfi.nde.Predict method) (colfi.nde.PredictNDEs method) from_net() (colfi.nde.Predict method)

G

gaussian_loss() (in module colfi.fcnet_g) (in module colfi.fcnet_mdn) gaussian_PDF() (in module colfi.fcnet_mdn) gaussian_sampler() (in module colfi.fcnet_mdn) (in module colfi.models_mg) GaussianMDN (class in colfi.fcnet_mdn) get_bestFits_ann() (colfi.plotter.PlotHparamsEffect method) get_contour() (colfi.plotter.PlotPosterior method) get_contour_edges() (colfi.data_simulator.SimParameters method) get_contours() (colfi.plotter.PlotMultiPosterior method) get_cov() (in module colfi.space_updater) get_CovMatrix() (in module colfi.space_updater) get_devs() (colfi.plotter.PlotHparamsEffect method) get_dropout() (in module colfi.element)

get_eco() (colfi.nde.Predict method) get_edge_space() (colfi.data_simulator.SimParameters method) get_loss() (colfi.nde.Predict method) get_losses() (colfi.plotter.PlotPosterior method) get_MB_statistic() (colfi.data_processor.DataPreprocessing method) get_multiParams() (colfi.data_simulator.SimParameters method) get_params() (colfi.data_simulator.SimParameters method) get_randn_suffix() (in module colfi.utils) get_seq() (colfi.sequence.LinearSeq method) get_sets() (colfi.models_ann.OptimizeMLP method) get_space_type_parts() (colfi.nde.NDEs method) get_statistic() (colfi.data_processor.DataPreprocessing method) get_steps() (colfi.plotter.PlotPosterior method) good_chains (colfi.nde.NDEs property) good_losses (colfi.nde.NDEs property)

H

hypercube() (colfi.data_simulator.SimParameters method)

hyperellipsoid() (colfi.data_simulator.SimParameters method) hypersphere() (colfi.data_simulator.SimParameters method)

I

in_polygon() (colfi.data_simulator.SimParameters method) include (colfi.data_simulator.ParametersFilter property) inverseNorm() (colfi.data_processor.InverseNormalize method)

InverseNormalize (class in colfi.data_processor) inverseNormalize_MB_obs() (colfi.data_processor.DataPreprocessing method) inverseNormalize_obs() (colfi.data_processor.DataPreprocessing method) inverseNormalize_params() (colfi.data_processor.DataPreprocessing method)

L

labels (colfi.cosmic_params.ParamsProperty property) LeakyReLU() (in module colfi.element) lhs() (colfi.data_simulator.SimParameters method) limited_spaceSigma_all() (colfi.space_updater.UpdateParameterSpace method) LinearSeq (class in colfi.sequence) load_chain() (colfi.models_ann.Loader method) load_chain_ann() (colfi.models_ann.Loader method) load_chains() (colfi.plotter.PlotHparamsEffect method) load_hparams() (colfi.models_ann.Loader method) load_loss() (colfi.models_ann.Loader method) load_ndeInfo() (colfi.plotter.PosteriorInfo method) load_ndeType() (colfi.models_ann.Loader method)

load_net() (colfi.models_ann.Loader method) load_subLine_point_chains() (colfi.plotter.PlotHparamsEffect method) load_wellTrainedNet() (colfi.models_ann.OneBranchMLP method) Loader (class in colfi.models_ann) Logger (class in colfi.utils) logger() (in module colfi.utils) LogSigmoid() (in module colfi.element) loss_funcs() (in module colfi.fcnet_ann) (in module colfi.fcnet_g) (in module colfi.fcnet_mdn) LossesData (class in colfi.plotter) LrDecay (class in colfi.utils)

M

makeList() (in module colfi.utils) maxPool1d() (in module colfi.element) maxPool2d() (in module colfi.element) maxPool3d() (in module colfi.element) mean (colfi.data_processor.Statistic property) mean() (colfi.data_processor.InverseNormalize method) (colfi.data_processor.Normalize method) minmax() (colfi.data_processor.InverseNormalize method) (colfi.data_processor.Normalize method) mkdir() (in module colfi.utils) MLPGaussian (class in colfi.fcnet_g) MLPMultivariateGaussian (class in colfi.fcnet_g) MLPMultivariateGaussian_AvgMultiNoise (class in colfi.fcnet_g) module colfi.cosmic_params colfi.data_processor colfi.data_simulator colfi.element colfi.fcnet_ann colfi.fcnet_g colfi.fcnet_mdn colfi.models_ann colfi.models_g colfi.models_mdn colfi.models_mg colfi.nde colfi.nodeframe colfi.plotter colfi.sequence colfi.space_updater colfi.utils

MultiBranchBetaMDN (class in colfi.fcnet_mdn) MultiBranchFcNet (class in colfi.fcnet_ann) MultiBranchFcNet_MC (class in colfi.fcnet_ann) MultiBranchFcNet_test (class in colfi.fcnet_ann) MultiBranchGaussianMDN (class in colfi.fcnet_mdn) MultiBranchMDN (class in colfi.models_mdn) MultiBranchMLP (class in colfi.models_ann) MultiBranchMLP_G (class in colfi.models_g) MultiBranchMLP_MG (class in colfi.models_mg) MultiBranchMLPGaussian (class in colfi.fcnet_g) MultiBranchMLPMultivariateGaussian (class in colfi.fcnet_g) MultiBranchMultivariateGaussianMDN (class in colfi.fcnet_mdn) multiNoisyObs() (colfi.data_simulator.AddGaussianNoise method) multiNoisySample() (colfi.data_simulator.AddGaussianNoise method) multiNormalObs() (colfi.data_simulator.AddGaussianNoise method) multiParams() (colfi.data_simulator.AddGaussianNoise method) multivariateGaussian_loss() (in module colfi.fcnet_g) (in module colfi.fcnet_mdn) multivariateGaussian_PDF() (in module colfi.fcnet_mdn) multivariateGaussian_sampler() (in module colfi.fcnet_mdn) (in module colfi.models_mg) MultivariateGaussianMDN (class in colfi.fcnet_mdn) MultivariateGaussianMDN_AvgMu (class in colfi.fcnet_mdn) MultivariateGaussianMDN_AvgMultiNoise (class in colfi.fcnet_mdn)

N

NDEs (class in colfi.nde) noisyObs() (colfi.data_simulator.AddGaussianNoise method) noisySample() (colfi.data_simulator.AddGaussianNoise method) norm() (colfi.data_processor.Normalize method) normal_params() (colfi.data_simulator.SimParameters method) Normalize (class in colfi.data_processor)

normalize_MB_obs() (colfi.data_processor.DataPreprocessing method) normalize_obs() (colfi.data_processor.DataPreprocessing method) normalize_params() (colfi.data_processor.DataPreprocessing method) num_train_burnIn (colfi.nde.NDEs property) numpy2cuda() (in module colfi.data_processor) numpy2torch() (in module colfi.data_processor)

O

obs_errors (colfi.models_ann.OptimizeMLP property) (colfi.nde.NDEs property) obs_noise() (colfi.data_simulator.AddGaussianNoise method) obs_variables (colfi.nde.NDEs property) (colfi.nde.Predict property) OneBranchMDN (class in colfi.models_mdn)

OneBranchMLP (class in colfi.models_ann) OneBranchMLP_G (class in colfi.models_g) OneBranchMLP_MG (class in colfi.models_mg) OptimizeMDN (class in colfi.models_mdn) OptimizeMLP (class in colfi.models_ann) OptimizeMLP_G (class in colfi.models_g)

P

panel() (colfi.plotter.BestFitsData method) (colfi.plotter.BestPredictedData method) (colfi.plotter.LossesData method) panel_data() (colfi.plotter.BestFitsData method) (colfi.plotter.BestPredictedData method) (colfi.plotter.LossesData method) (colfi.plotter.PlotHparamsEffect method) panels_data() (colfi.plotter.BestFitsData method) (colfi.plotter.BestPredictedData method) (colfi.plotter.LossesData method) param_devs (colfi.space_updater.UpdateParameterSpace property) param_devs() (colfi.space_updater.Chains static method) param_fullNames (colfi.cosmic_params.ParamsProperty property) param_labels (colfi.plotter.PosteriorInfo property) ParametersFilter (class in colfi.data_simulator) params_dict_zoo() (in module colfi.cosmic_params) params_limit (colfi.cosmic_params.ParamsProperty property) params_n (colfi.data_simulator.SimParameters property) params_n() (colfi.space_updater.Chains static method) params_space() (colfi.space_updater.UpdateParameterSpace method) ParamsProperty (class in colfi.cosmic_params) pcc() (in module colfi.plotter) pdf_1() (in module colfi.space_updater) plot() (colfi.plotter.PlotHparamsEffect method) (colfi.plotter.PlotPrediction method) plot_contour() (colfi.models_ann.OneBranchMLP method) plot_loss() (colfi.models_ann.OneBranchMLP method) PlotHparamsEffect (class in colfi.plotter) PlotMultiPosterior (class in colfi.plotter) PlotPosterior (class in colfi.plotter)

PlotPrediction (class in colfi.plotter) points2line() (colfi.plotter.PlotHparamsEffect method) poly() (colfi.utils.LrDecay method) Pooling (class in colfi.sequence) pooling() (in module colfi.element) posterior_hyperellipsoid() (colfi.data_simulator.SimParameters method) PosteriorInfo (class in colfi.plotter) Predict (class in colfi.nde) predict() (colfi.models_ann.MultiBranchMLP method) (colfi.models_ann.OneBranchMLP method) predict_chain() (colfi.models_ann.MultiBranchMLP method) (colfi.models_ann.OneBranchMLP method) (colfi.models_mdn.MultiBranchMDN method) (colfi.models_mdn.OneBranchMDN method) (colfi.models_mg.MultiBranchMLP_MG method) (colfi.models_mg.OneBranchMLP_MG method) predict_params() (colfi.models_ann.OneBranchMLP method) PredictMBMDN (class in colfi.models_mdn) PredictMBMLP (class in colfi.models_ann) PredictMBMLP_G (class in colfi.models_g) PredictMBMLP_MG (class in colfi.models_mg) PredictNDEs (class in colfi.nde) PredictOBMDN (class in colfi.models_mdn) PredictOBMLP (class in colfi.models_ann) PredictOBMLP_G (class in colfi.models_g) PredictOBMLP_MG (class in colfi.models_mg) PReLU() (in module colfi.element) print_hparams() (colfi.nde.NDEs method) print_learningRange() (colfi.space_updater.UpdateParameterSpace method) print_loss() (colfi.models_ann.OneBranchMLP method)

R

R2() (in module colfi.plotter) random_ball() (colfi.data_simulator.SimParameters method) ReLU() (in module colfi.element)

ReLU6() (in module colfi.element) remove_nan() (in module colfi.utils) reshape_chain() (colfi.space_updater.Chains static method) RReLU() (in module colfi.element)

S

same_variables (colfi.nde.Predict property) sampler (colfi.models_mdn.MultiBranchMDN property) (colfi.models_mdn.OneBranchMDN property) (colfi.models_mg.MultiBranchMLP_MG property) (colfi.models_mg.OneBranchMLP_MG property) samplers() (in module colfi.fcnet_mdn) (in module colfi.models_mg) save_chain() (colfi.models_ann.OneBranchMLP method) save_fig() (colfi.plotter.PlotPrediction method) save_hparams() (colfi.models_ann.OneBranchMLP method) save_loss() (colfi.models_ann.OneBranchMLP method) save_ndeInfo() (colfi.nde.NDEs method) save_ndeType() (colfi.models_ann.OneBranchMLP method) save_net() (colfi.models_ann.OneBranchMLP method) save_predict() (in module colfi.utils) save_samples() (colfi.data_simulator.SimMultiObservations method) (colfi.data_simulator.SimObservations method) save_samples_2() (colfi.data_simulator.SimObservations method) save_samples_3() (colfi.data_simulator.SimObservations method) save_samples_3_onePart() (colfi.data_simulator.SimObservations method) save_variables() (colfi.nde.NDEs method) savenpy() (in module colfi.utils) saveTorchPt() (in module colfi.utils) savetxt() (in module colfi.utils) SELU() (in module colfi.element) seq_name() (colfi.sequence.SeqName method) SeqName (class in colfi.sequence) sigma() (colfi.space_updater.Chains static method) Sigmoid() (in module colfi.element)

Sigmoid_1 (class in colfi.element) sigmoid_1() (in module colfi.element) SiLU() (in module colfi.element) SimMultiObservations (class in colfi.data_simulator) SimObservations (class in colfi.data_simulator) SimParameters (class in colfi.data_simulator) simulate() (colfi.data_simulator.SimObservations method) (colfi.nde.NDEs method) simulate_obs() (colfi.data_simulator.SimMultiObservations method) (colfi.data_simulator.SimObservations method) singleNormalObs() (colfi.data_simulator.AddGaussianNoise method) small_dev() (colfi.space_updater.UpdateParameterSpace method) Softplus() (in module colfi.element) Softplus_1 (class in colfi.element) softplus_1() (in module colfi.element) Softplus_2 (class in colfi.element) softplus_2() (in module colfi.element) Softsign() (in module colfi.element) spaceSigma_all (colfi.space_updater.UpdateParameterSpace property) spaceSigma_max (colfi.space_updater.UpdateParameterSpace property) spaceSigma_min (colfi.space_updater.UpdateParameterSpace property) split_data() (colfi.nde.NDEs method) split_nodes() (in module colfi.fcnet_ann) Statistic (class in colfi.data_processor) statistic() (colfi.data_processor.Statistic method) statistic_dim_obs (colfi.models_ann.OneBranchMLP property) statistic_dim_params (colfi.models_ann.OneBranchMLP property) statistic_torch() (colfi.data_processor.Statistic method) std (colfi.data_processor.Statistic property) step() (colfi.utils.LrDecay method)

T

Tanh() (in module colfi.element) Tanhshrink() (in module colfi.element) torch2cuda() (in module colfi.data_processor) torch2numpy() (in module colfi.data_processor) train() (colfi.models_ann.MultiBranchMLP method) (colfi.models_ann.OneBranchMLP method) (colfi.models_g.MultiBranchMLP_G method) (colfi.models_g.OneBranchMLP_G method) (colfi.models_mdn.MultiBranchMDN method) (colfi.models_mdn.OneBranchMDN method) (colfi.nde.NDEs method) train_AvgMu() (colfi.models_mdn.OneBranchMDN method) train_AvgMultiNoise() (colfi.models_g.OneBranchMLP_G method) (colfi.models_mdn.OneBranchMDN method) train_branch_trunk() (colfi.models_ann.MultiBranchMLP method) trained_variables (colfi.nde.Predict property) training (colfi.element.ELU_1 attribute) (colfi.element.Sigmoid_1 attribute) (colfi.element.Softplus_1 attribute) (colfi.element.Softplus_2 attribute) (colfi.fcnet_ann.FcNet attribute) (colfi.fcnet_ann.MultiBranchFcNet attribute) (colfi.fcnet_ann.MultiBranchFcNet_MC attribute) (colfi.fcnet_ann.MultiBranchFcNet_test attribute) (colfi.fcnet_g.Branch attribute) (colfi.fcnet_g.MLPGaussian attribute) (colfi.fcnet_g.MLPMultivariateGaussian attribute) (colfi.fcnet_g.MLPMultivariateGaussian_AvgMultiNoise attribute) (colfi.fcnet_g.MultiBranchMLPGaussian attribute) (colfi.fcnet_g.MultiBranchMLPMultivariateGaussian attribute) (colfi.fcnet_mdn.BetaMDN attribute) (colfi.fcnet_mdn.Branch attribute) (colfi.fcnet_mdn.GaussianMDN attribute) (colfi.fcnet_mdn.MultiBranchBetaMDN attribute) (colfi.fcnet_mdn.MultiBranchGaussianMDN attribute) (colfi.fcnet_mdn.MultiBranchMultivariateGaussianMDN attribute) (colfi.fcnet_mdn.MultivariateGaussianMDN attribute) (colfi.fcnet_mdn.MultivariateGaussianMDN_AvgMu attribute) (colfi.fcnet_mdn.MultivariateGaussianMDN_AvgMultiNoise attribute)

Transfer (class in colfi.data_processor) transfer_base() (colfi.data_processor.Transfer method) transfer_branchNet() (colfi.models_ann.MultiBranchMLP method) transfer_data() (colfi.data_processor.Transfer method) transfer_MB_data() (colfi.data_processor.Transfer method) transfer_MB_trainSet() (colfi.data_processor.Transfer method) transfer_MB_valiSet() (colfi.data_processor.Transfer method) transfer_net() (colfi.data_processor.Transfer method) transfer_trainSet() (colfi.data_processor.Transfer method) transfer_valiSet() (colfi.data_processor.Transfer method)

U

uniform_params() (colfi.data_simulator.SimParameters method) unique_elements() (colfi.data_simulator.SimParameters method)

update_params_space() (colfi.nde.NDEs method) UpdateParameterSpace (class in colfi.space_updater)

W

write() (colfi.utils.Logger method)

X

xlabel (colfi.plotter.PlotHparamsEffect property)

xmax (colfi.data_processor.Statistic property) xmin (colfi.data_processor.Statistic property)

Z

z_score() (colfi.data_processor.InverseNormalize method) (colfi.data_processor.Normalize method)